The reason you may be missing some of the things needed to load Master Assassin is because they tweaked the Spy trees for the Combat Revision. Some of the skills from one branch got moved to ther other and vice versa. It's quite possible something you never had because it was part of the other branch has now been moved into the branch you're trying to load, thus screwing the branch up.
Hehehe.. sorry.. hehe
To put your stuff on the hotbar, you open your Actions list by either pressing K or using the menu on the left side of that compass thing in the middle/bottom of the screen. You can then just drag and drop into the hotbar.
Hyperjump can be done using a hotbar shortcut, or either of the two keyboard shortcuts: Ctrl+Space or Alt+J (I think that's what they are anyway.. I never use Alt+J and I changed the bind for Ctrl+Space lol )
To get the abilities you are missing, you can either buy them from a vendor (check mxoresource.com for the locations of vendors for spy/operative stuff), buy them off the marketplace at any hardline or in the loading area, or you can have another player make them for you (or make them yourself). If they are higher level abilities, you may not be able to buy them from a vendor, and may have to craft them or have someone else do it.
What org do you work for? Due to the current hostilties, Mero and Zion ops are targeted whether they have the nodes tagged or not.. or so I've heard anyway *flashes Machinist crest on his uniform*
im switching to machine lol the zion pvpers are pathedic. no offense... figures horde pwn in wow imps own in swg and machines own in matrix... i knew there was a reason this was the last game i played the good guys in
well Im maxed out zion but faction really doesnt matter to me lol sux if thats true... Btw Im on what used to be Method server.