So, the BIP is the One (potential unrealized, of course).

The controls over humans were part of an arrangement. (With whom? For what?)

Danielle Wright was able to broker a deal with the Oligarchs (for lack of a better name). 

And "this" will all soon come to an end. . .

The cycle of the One is about to begin anew. Stay tuned for Neo returning as an Oligarch.

And I have a feeling he's not bringing good news.